Resource
| Id | DNase-seq/ENCSR277ZHX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF185URC|/files/ENCFF185URC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR277ZHX | float |
DNase-seq_ENCSR277ZHX |
DNase-seq ENCSR277ZHX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (40 years)"]
|
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[0.0197, 15.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22372598 | 0.70% | 117093 |
| chr1 | 2216588 | 0.89% | 11694 |
| chr2 | 1734612 | 0.72% | 9167 |
| chr3 | 1401684 | 0.71% | 7374 |
| chr4 | 903622 | 0.48% | 4758 |
| chr5 | 1135154 | 0.63% | 6001 |
| chr6 | 1388693 | 0.81% | 7295 |
| chr7 | 1028876 | 0.65% | 5415 |
| chr8 | 943146 | 0.65% | 4946 |
| chr9 | 914256 | 0.66% | 4791 |
| chr10 | 1049700 | 0.78% | 5506 |
| chr11 | 1129664 | 0.84% | 5882 |
| chr12 | 1207871 | 0.91% | 6284 |
| chr13 | 491313 | 0.43% | 2602 |
| chr14 | 703565 | 0.66% | 3648 |
| chr15 | 749969 | 0.74% | 3948 |
| chr16 | 747094 | 0.83% | 3906 |
| chr17 | 1165101 | 1.40% | 5998 |
| chr18 | 435975 | 0.54% | 2282 |
| chr19 | 995498 | 1.70% | 5008 |
| chr20 | 658220 | 1.02% | 3422 |
| chr21 | 276681 | 0.59% | 1436 |
| chr22 | 454853 | 0.90% | 2362 |
| chrX | 615850 | 0.39% | 3235 |
| chrY | 24613 | 0.04% | 133 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 117093 | 1 | 820 | 191.07 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF531CKE.bed.gz | 1.28 MB | 9b203ca5356c39efe433a5f6b90a08e8 |
| ENCFF531CKE.tabix.bed.gz | 1.17 MB | 3d3df4331e52fe8a495c72c422952acc |
| ENCFF531CKE.tabix.bed.gz.tbi | 359.03 KB | 1277a27431c92975cab066d36931d736 |
| genomic_resource.yaml | 2.16 KB | fb6fe3b5f1e1542cd362c3f6b1ad51bb |
| statistics/ |
