Resource

Id DNase-seq/ENCSR275ICPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR275ICP [biosample_summary="Homo sapiens H9"]
Description
Labels
  • accession: ENCSR275ICP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9
  • date_created: 2017-08-31T05:31:18.226599+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR275ICP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR275ICP float

DNase-seq_ENCSR275ICP
DNase-seq ENCSR275ICP [biosample_summary="Homo sapiens H9"]
 HISTOGRAM FOR DNase-seq_ENCSR275ICP [0.0313, 23.1]
n
33,625,122
mean
1.27
sd
1.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 336251221.05% 158236
chr1 2997078 1.20% 13855
chr2 2665082 1.10% 12661
chr3 1761100 0.89% 8436
chr4 1272745 0.67% 6126
chr5 1633394 0.90% 7754
chr6 1567722 0.92% 7533
chr7 1613818 1.01% 7674
chr8 1323440 0.91% 6420
chr9 1426530 1.03% 6727
chr10 1744444 1.30% 8190
chr11 1824113 1.35% 8464
chr12 1901747 1.43% 8858
chr13 733574 0.64% 3567
chr14 1062018 0.99% 4965
chr15 1097253 1.08% 5233
chr16 1112124 1.23% 5259
chr17 2559013 3.07% 11480
chr18 644910 0.80% 3134
chr19 1497578 2.55% 6773
chr20 1015977 1.58% 4800
chr21 419694 0.90% 1961
chr22 884184 1.74% 4146
chrX 866219 0.56% 4211
chrY 1365 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158236 1 1180 212.5 200
global segment-length histogram

Files

Filename Size md5
ENCFF121PBD.bed.gz 1.65 MB 21ebd3ae526a0b7e7db398483ae740da
ENCFF121PBD.tabix.bed.gz 1.53 MB f2ccf68545c59400c07b2c70a2cead27
ENCFF121PBD.tabix.bed.gz.tbi 461.31 KB e4b1af75a241551a664a707c56bc11a4
genomic_resource.yaml 1.06 KB 660164ce7e17c525881fdedfa9274f73
statistics/