Resource

Id DNase-seq/ENCSR274XTScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR274XTS [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR274XTS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-19T18:37:00.505746+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR274XTS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR274XTS float

DNase-seq_ENCSR274XTS
DNase-seq ENCSR274XTS [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR274XTS [0.0446, 19.3]
n
28,517,283
mean
1.13
sd
1.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 285172830.89% 129561
chr1 2717446 1.09% 12086
chr2 2589973 1.07% 11775
chr3 1397809 0.70% 6292
chr4 824110 0.43% 3733
chr5 1422276 0.78% 6329
chr6 1399915 0.82% 6354
chr7 1410878 0.89% 6464
chr8 1170104 0.81% 5443
chr9 1240831 0.90% 5651
chr10 1466341 1.10% 6787
chr11 1484631 1.10% 6694
chr12 1252783 0.94% 5764
chr13 493956 0.43% 2228
chr14 952304 0.89% 4393
chr15 1138496 1.12% 5271
chr16 1125959 1.25% 5178
chr17 1709217 2.05% 7685
chr18 564329 0.70% 2576
chr19 1277159 2.18% 5651
chr20 964096 1.50% 4539
chr21 509851 1.09% 2293
chr22 899849 1.77% 4160
chrX 491071 0.31% 2139
chrY 13899 0.02% 76
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129561 1 1220 220.11 200
global segment-length histogram

Files

Filename Size md5
ENCFF992PUZ.bed.gz 1.27 MB 5e70e91ff926dececd2361da7c78a931
ENCFF992PUZ.tabix.bed.gz 1.2 MB f626bb39757d7304249e50a8433dfa37
ENCFF992PUZ.tabix.bed.gz.tbi 268.86 KB 511b08ddd36983b256e6a0108a1f735a
genomic_resource.yaml 1.8 KB f418d2fc4b00724703117cdac4ca6087
statistics/