Resource

Id DNase-seq/ENCSR274SDOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR274SDO [biosample_summary="Homo sapiens right forelimb tissue male embryo (81 days)"]
Description
Labels
  • accession: ENCSR274SDO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_8300001/
  • biosample_summary: Homo sapiens right forelimb tissue male embryo (81 days)
  • date_created: 2017-11-01T21:26:56.578643+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR274SDO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (81 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR274SDO float

DNase-seq_ENCSR274SDO
DNase-seq ENCSR274SDO [biosample_summary="Homo sapiens right forelimb tissue male embryo (81 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR274SDO [3, 2.02e+04]
n
30,648,690
mean
163
sd
275

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 306486900.95% 203788
chr1 2732519 1.10% 18192
chr2 2735753 1.13% 18179
chr3 1762155 0.89% 11721
chr4 1274747 0.67% 8470
chr5 1642326 0.90% 10917
chr6 1541846 0.90% 10254
chr7 1439265 0.90% 9570
chr8 1339485 0.92% 8894
chr9 1437643 1.04% 9557
chr10 1822170 1.36% 12104
chr11 1749808 1.30% 11637
chr12 1284720 0.96% 8543
chr13 724863 0.63% 4829
chr14 1094991 1.02% 7280
chr15 1104115 1.08% 7347
chr16 1052504 1.17% 6999
chr17 1377502 1.65% 9163
chr18 669294 0.83% 4447
chr19 950132 1.62% 6322
chr20 937654 1.45% 6231
chr21 481778 1.03% 3200
chr22 786078 1.55% 5228
chrX 672557 0.43% 4473
chrY 34785 0.06% 231
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 203788 1 600 150.39 150
global segment-length histogram

Files

Filename Size md5
ENCFF463KFI.bed.gz 1.92 MB 443089939c0e15c5f57c91cb4f271d9d
ENCFF463KFI.tabix.bed.gz 1.65 MB da97697a12878943beead00bec3dad63
ENCFF463KFI.tabix.bed.gz.tbi 499.86 KB 7611781ed22d211e91b31882ccbf7900
genomic_resource.yaml 1.4 KB 4853b17b4559d0381a3159d7c0a79b6c
statistics/