type: position_score
table:
  filename: ENCFF601IBY.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR274FZD
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR274FZD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''''s disease; head of caudate nucleus tissue female adult (90 or above years)"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR274FZD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''''s disease; head of caudate nucleus tissue female adult (90 or above years)"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (90 or above years) with Cognitive impairment, Alzheimer''s
    disease


    **output\_type**: peaks


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF773CBJ|/files/ENCFF773CBJ/} processed by DNase-seq ENCODE4
    v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly  have
    a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR274FZD
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female adult (90 or above years) with Cognitive impairment,
      Alzheimer's disease
    biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease;
      head of caudate nucleus tissue female adult (90 or above years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0002626/
    perturbed: false
    doi: 10.17989/ENCSR274FZD
    date_created: '2021-04-01T15:48:57.751634+00:00'
    date_released: '2021-06-17'
    submitter_comment: ''