Resource

Id DNase-seq/ENCSR273USDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR273USD [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
Description
Labels
  • accession: ENCSR273USD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • date_created: 2020-04-19T18:36:51.956612+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR273USD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR273USD float

DNase-seq_ENCSR273USD
DNase-seq ENCSR273USD [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR273USD [0.316, 50.8]
n
8,285,072
mean
6.6
sd
6.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82850720.26% 46020
chr1 855411 0.34% 4743
chr2 573824 0.24% 3207
chr3 458975 0.23% 2535
chr4 290678 0.15% 1586
chr5 360488 0.20% 2012
chr6 479555 0.28% 2669
chr7 377600 0.24% 2089
chr8 314934 0.22% 1801
chr9 343226 0.25% 1915
chr10 362173 0.27% 2035
chr11 418234 0.31% 2340
chr12 430745 0.32% 2373
chr13 164575 0.14% 899
chr14 277767 0.26% 1562
chr15 284211 0.28% 1582
chr16 344260 0.38% 1919
chr17 498814 0.60% 2739
chr18 134417 0.17% 763
chr19 557034 0.95% 2981
chr20 239836 0.37% 1355
chr21 93604 0.20% 534
chr22 199692 0.39% 1127
chrX 218191 0.14% 1217
chrY 6828 0.01% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46020 2 760 180.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF965IJZ.bed.gz 500.1 KB bc24fba0acfbacb3a3b31a27c4634721
ENCFF965IJZ.tabix.bed.gz 453.25 KB 3090ebacb63fa707cb47594f19f2cb77
ENCFF965IJZ.tabix.bed.gz.tbi 231.89 KB 2e314f996d8f7ce000cf41ec338b1546
genomic_resource.yaml 2.21 KB 18ff20c7ce114ce3a0a35144267fc7e6
statistics/