Resource

Id DNase-seq/ENCSR272RQXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR272RQX [biosample_summary="Homo sapiens muscle of leg tissue female embryo (113 days)"]
Description
Labels
  • accession: ENCSR272RQX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue female embryo (113 days)
  • date_created: 2015-09-16T21:42:36.488710+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR272RQX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR272RQX float

DNase-seq_ENCSR272RQX

DNase-seq ENCSR272RQX [biosample_summary="Homo sapiens muscle of leg tissue female embryo (113 days)"]
HISTOGRAM FOR DNase-seq_ENCSR272RQX [0.0231, 47.8]
n
59,265,412
mean
1.24
sd
2.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 592654121.84% 299278
chr1 5019747 2.02% 25205
chr2 4916811 2.03% 25037
chr3 4002168 2.02% 20391
chr4 3318287 1.74% 16987
chr5 3498656 1.93% 17759
chr6 3637447 2.13% 18366
chr7 3038178 1.91% 15491
chr8 2950034 2.03% 14919
chr9 2567579 1.86% 12848
chr10 2996420 2.24% 15013
chr11 2918294 2.16% 14631
chr12 2839777 2.13% 14337
chr13 1811533 1.58% 9276
chr14 1916415 1.79% 9652
chr15 1821680 1.79% 9208
chr16 1721709 1.91% 8642
chr17 2220780 2.67% 10979
chr18 1410726 1.76% 7166
chr19 1573659 2.68% 7592
chr20 1481561 2.30% 7389
chr21 738949 1.58% 3710
chr22 918309 1.81% 4616
chrX 1945050 1.25% 10051
chrY 1643 <0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 299278 1 1120 198.03 200
global segment-length histogram

Files

Filename Size md5
ENCFF593ULX.bed.gz 3.18 MB 934a843931fd9ddce052d94237d6f4d7
ENCFF593ULX.tabix.bed.gz 2.92 MB 6eafda071da7484fafaad2740a7504c9
ENCFF593ULX.tabix.bed.gz.tbi 781.38 KB d1e70f5b5381f8bfb6f741808a375ca8
genomic_resource.yaml 1.23 KB c5e5d18c91420d9569449f5a490dec60
statistics/