Resource

Id DNase-seq/ENCSR271QSVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR271QSV [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult"]
Description
Labels
  • accession: ENCSR271QSV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001059/
  • biosample_summary: Homo sapiens common myeloid progenitor, CD34-positive male adult
  • date_created: 2015-09-16T21:42:08.380210+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR271QSV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR271QSV float

DNase-seq_ENCSR271QSV
DNase-seq ENCSR271QSV [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult"]
 HISTOGRAM FOR DNase-seq_ENCSR271QSV [0.155, 56.4]
n
17,485,571
mean
3.85
sd
5.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 174855710.54% 96525
chr1 1671685 0.67% 9166
chr2 1308328 0.54% 7299
chr3 1119824 0.56% 6227
chr4 821049 0.43% 4559
chr5 891525 0.49% 4940
chr6 1044283 0.61% 5695
chr7 882658 0.55% 4936
chr8 758422 0.52% 4237
chr9 699454 0.51% 3888
chr10 838668 0.63% 4655
chr11 859505 0.64% 4747
chr12 891675 0.67% 4932
chr13 433084 0.38% 2416
chr14 586070 0.55% 3199
chr15 561185 0.55% 3127
chr16 594541 0.66% 3257
chr17 821982 0.99% 4462
chr18 361124 0.45% 2022
chr19 801289 1.37% 4188
chr20 457441 0.71% 2559
chr21 206887 0.44% 1148
chr22 344608 0.68% 1910
chrX 507206 0.33% 2824
chrY 23078 0.04% 132
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96525 1 760 181.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF116WZJ.bed.gz 1.02 MB 8730bbf3b52c1e07b8747c0aee9f9b0e
ENCFF116WZJ.tabix.bed.gz 944.95 KB 537d1dd6a2603d2ff0802b977d25e596
ENCFF116WZJ.tabix.bed.gz.tbi 434.22 KB 56e73119e9956dbc7979ea4af188f589
genomic_resource.yaml 1.23 KB c4f8b2018acc7ea830e0b601df07c241
statistics/