Resource
| Id | DNase-seq/ENCSR270JQK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR270JQK [biosample_summary="Homo sapiens T-cell female adult (40 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (40 years) output_type: peaks audit_warning: Alignment file {ENCFF727ZRD|/files/ENCFF727ZRD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41836838 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR270JQK | float |
DNase-seq_ENCSR270JQK |
DNase-seq ENCSR270JQK [biosample_summary="Homo sapiens T-cell female adult (40 years)"]
|
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[0.383, 65.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7219169 | 0.22% | 39074 |
| chr1 | 738528 | 0.30% | 3998 |
| chr2 | 493735 | 0.20% | 2662 |
| chr3 | 387992 | 0.20% | 2083 |
| chr4 | 246309 | 0.13% | 1319 |
| chr5 | 310391 | 0.17% | 1706 |
| chr6 | 416239 | 0.24% | 2240 |
| chr7 | 332581 | 0.21% | 1836 |
| chr8 | 257724 | 0.18% | 1405 |
| chr9 | 290856 | 0.21% | 1584 |
| chr10 | 318792 | 0.24% | 1739 |
| chr11 | 372378 | 0.28% | 2037 |
| chr12 | 363063 | 0.27% | 1960 |
| chr13 | 139542 | 0.12% | 741 |
| chr14 | 252147 | 0.24% | 1351 |
| chr15 | 231708 | 0.23% | 1261 |
| chr16 | 306214 | 0.34% | 1659 |
| chr17 | 449569 | 0.54% | 2430 |
| chr18 | 111094 | 0.14% | 610 |
| chr19 | 525752 | 0.90% | 2752 |
| chr20 | 207828 | 0.32% | 1149 |
| chr21 | 80962 | 0.17% | 452 |
| chr22 | 179932 | 0.35% | 990 |
| chrX | 205833 | 0.13% | 1110 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39074 | 5 | 780 | 184.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF696CWC.bed.gz | 436.85 KB | ed239e505b11692b40af0b632738257a |
| ENCFF696CWC.tabix.bed.gz | 395.53 KB | 991de99e2e9e3e043ee391c538107633 |
| ENCFF696CWC.tabix.bed.gz.tbi | 201.84 KB | 7414fbbd813e52255dcbc45a1da62f71 |
| genomic_resource.yaml | 1.8 KB | 14b534b216bbc89408797f65272716c4 |
| statistics/ |
