Resource

Id DNase-seq/ENCSR268GBMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR268GBM [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR268GBM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:53.631225+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR268GBM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR268GBM float

DNase-seq_ENCSR268GBM
DNase-seq ENCSR268GBM [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR268GBM [0.126, 45.4]
n
13,221,383
mean
4.61
sd
5.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 132213830.41% 72026
chr1 1301278 0.52% 7031
chr2 958199 0.40% 5280
chr3 726496 0.37% 3943
chr4 506553 0.27% 2725
chr5 613118 0.34% 3368
chr6 689338 0.40% 3737
chr7 665688 0.42% 3653
chr8 541337 0.37% 2972
chr9 576084 0.42% 3177
chr10 618432 0.46% 3382
chr11 740884 0.55% 4082
chr12 640861 0.48% 3456
chr13 276244 0.24% 1512
chr14 434604 0.41% 2357
chr15 433920 0.43% 2370
chr16 538338 0.60% 2961
chr17 711876 0.86% 3860
chr18 248154 0.31% 1350
chr19 751229 1.28% 3951
chr20 420273 0.65% 2303
chr21 153969 0.33% 865
chr22 336093 0.66% 1870
chrX 338315 0.22% 1820
chrY 100 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72026 2 800 183.56 180
global segment-length histogram

Files

Filename Size md5
ENCFF690GJE.bed.gz 805.1 KB a54f9544d46c63e6d8d73c939df14c34
ENCFF690GJE.tabix.bed.gz 732.45 KB a745ac570457dc3322dea3460d3704b6
ENCFF690GJE.tabix.bed.gz.tbi 310.93 KB 185133f90135e803ccc0af2ea57837af
genomic_resource.yaml 1.47 KB f4d147f694d5899e4a4b17b3b41b4d70
statistics/