Resource

Id DNase-seq/ENCSR258IBLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR258IBL [biosample_summary="Homo sapiens left renal pelvis tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR258IBL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018115/
  • biosample_summary: Homo sapiens left renal pelvis tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:30.093665+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR258IBL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR258IBL float

DNase-seq_ENCSR258IBL
DNase-seq ENCSR258IBL [biosample_summary="Homo sapiens left renal pelvis tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR258IBL [0.206, 20.8]
n
9,298,498
mean
2.75
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92984980.29% 52095
chr1 854082 0.34% 4768
chr2 720117 0.30% 4050
chr3 619491 0.31% 3494
chr4 483528 0.25% 2730
chr5 528946 0.29% 2963
chr6 561786 0.33% 3136
chr7 467630 0.29% 2610
chr8 416660 0.29% 2377
chr9 391925 0.28% 2213
chr10 437473 0.33% 2467
chr11 486585 0.36% 2719
chr12 471751 0.35% 2621
chr13 244409 0.21% 1390
chr14 303030 0.28% 1664
chr15 300883 0.30% 1692
chr16 294822 0.33% 1661
chr17 382317 0.46% 2124
chr18 212604 0.26% 1217
chr19 400920 0.68% 2068
chr20 234576 0.36% 1352
chr21 96503 0.21% 559
chr22 157735 0.31% 891
chrX 224551 0.14% 1297
chrY 6174 0.01% 32
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52095 1 840 178.49 179
global segment-length histogram

Files

Filename Size md5
ENCFF322IFH.bed.gz 551.06 KB 04f52fe402a5294f8b055740c21e93c4
ENCFF322IFH.tabix.bed.gz 489.16 KB d2183c01bb64e9b2eda97cb1c4eaadf9
ENCFF322IFH.tabix.bed.gz.tbi 296.7 KB cedcca37818da3809c91b31fa447fcbf
genomic_resource.yaml 1.85 KB 897e5f8171bdaf4a039a8c7d1387144d
statistics/