Resource

Id DNase-seq/ENCSR257BGZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR257BGZ [biosample_summary="Homo sapiens ACHN"]
Description
Labels
  • accession: ENCSR257BGZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002108/
  • biosample_summary: Homo sapiens ACHN
  • date_created: 2015-03-22T21:31:31.275580+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR257BGZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR257BGZ float

DNase-seq_ENCSR257BGZ
DNase-seq ENCSR257BGZ [biosample_summary="Homo sapiens ACHN"]
 HISTOGRAM FOR DNase-seq_ENCSR257BGZ [0.0365, 29.8]
n
26,755,569
mean
2.03
sd
2.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 267555690.83% 142001
chr1 2541023 1.02% 13427
chr2 2249523 0.93% 11950
chr3 1664481 0.84% 8899
chr4 1298763 0.68% 7019
chr5 1395830 0.77% 7445
chr6 1548647 0.91% 8243
chr7 1567788 0.98% 8230
chr8 1128699 0.78% 6102
chr9 1078660 0.78% 5721
chr10 1343010 1.00% 7128
chr11 1235982 0.91% 6583
chr12 1560919 1.17% 8129
chr13 661555 0.58% 3574
chr14 820833 0.77% 4351
chr15 878141 0.86% 4610
chr16 960065 1.06% 5026
chr17 1270863 1.53% 6585
chr18 538268 0.67% 2916
chr19 874659 1.49% 4519
chr20 657549 1.02% 3511
chr21 263793 0.56% 1407
chr22 497860 0.98% 2655
chrX 717631 0.46% 3963
chrY 1027 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142001 1 940 188.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF777XHM.bed.gz 1.53 MB 6379b64014c7bba32572b046eee12ae6
ENCFF777XHM.tabix.bed.gz 1.4 MB ec6b2464f36a27cf918963fa306b9000
ENCFF777XHM.tabix.bed.gz.tbi 504.91 KB 24721aabdd7a03d42e7f064a9f99c655
genomic_resource.yaml 1.06 KB e92d807d603decaf3411a6599c08bb38
statistics/