Resource

Id DNase-seq/ENCSR252NVIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR252NVI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
Description
Labels
  • accession: ENCSR252NVI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • date_created: 2018-11-30T18:43:54.098144+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR252NVI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years) treated with 100 ng/mL Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • status: released
  • submitter_comment: The experiment biosample had only one associated treatment Interleukin-10 (UniProtKB:P22301) for 8 hours. Treatments anti-CD3 and anti-CD28 coated beads for 16 hours & 50 U/mL Interleukin-2 (UniProtKB:P60568) for 16 hours have been added to the biosample on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR252NVI float

DNase-seq_ENCSR252NVI
DNase-seq ENCSR252NVI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR252NVI [0.0526, 29.6]
n
26,350,948
mean
2.14
sd
3.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 263509480.82% 136134
chr1 2546615 1.02% 13162
chr2 2080171 0.86% 10729
chr3 1715654 0.87% 8828
chr4 1145989 0.60% 5993
chr5 1322999 0.73% 6893
chr6 1709771 1.00% 8684
chr7 1248321 0.78% 6526
chr8 1164267 0.80% 6033
chr9 1058995 0.77% 5503
chr10 1264053 0.94% 6555
chr11 1255194 0.93% 6506
chr12 1340120 1.01% 6840
chr13 623928 0.55% 3283
chr14 916510 0.86% 4712
chr15 869342 0.85% 4542
chr16 913992 1.01% 4644
chr17 1257620 1.51% 6391
chr18 526244 0.65% 2775
chr19 1045963 1.78% 5300
chr20 682806 1.06% 3556
chr21 297828 0.64% 1571
chr22 505839 1.00% 2608
chrX 858344 0.55% 4497
chrY 383 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136134 1 920 193.57 187
global segment-length histogram

Files

Filename Size md5
ENCFF671NRW.bed.gz 1.47 MB 930ee8498ec8c9810f61ef2e5a0713be
ENCFF671NRW.tabix.bed.gz 1.35 MB 03364368cd40d2a4b6fec77758191fa6
ENCFF671NRW.tabix.bed.gz.tbi 477.62 KB aa6867db09e1586a958d2428ef917e1f
genomic_resource.yaml 2.26 KB 7c6ab5ff3870f2c0fa519b5279a3e664
statistics/