Resource

Id DNase-seq/ENCSR251UPGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR251UPG [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
Description
Labels
  • accession: ENCSR251UPG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-16T21:42:14.631835+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR251UPG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR251UPG float

DNase-seq_ENCSR251UPG

DNase-seq ENCSR251UPG [biosample_summary="Homo sapiens foreskin fibroblast male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR251UPG [0.0899, 45.3]
n
26,484,482
mean
3.42
sd
4.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 264844820.82% 147168
chr1 2488477 1.00% 13842
chr2 2186159 0.90% 12177
chr3 1822483 0.92% 10166
chr4 1339629 0.70% 7521
chr5 1546534 0.85% 8615
chr6 1674040 0.98% 9272
chr7 1317122 0.83% 7399
chr8 1248979 0.86% 6942
chr9 1138697 0.82% 6337
chr10 1262724 0.94% 7050
chr11 1302869 0.96% 7206
chr12 1367343 1.03% 7604
chr13 741196 0.65% 4158
chr14 784005 0.73% 4305
chr15 870213 0.85% 4826
chr16 802828 0.89% 4402
chr17 1079822 1.30% 5928
chr18 585826 0.73% 3288
chr19 845953 1.44% 4525
chr20 688480 1.07% 3816
chr21 293841 0.63% 1619
chr22 435986 0.86% 2433
chrX 637218 0.41% 3601
chrY 24058 0.04% 136
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 147168 3 740 179.96 180
global segment-length histogram

Files

Filename Size md5
ENCFF448WJQ.bed.gz 1.56 MB 8ca24e112ce90c9bfc4c77071826de67
ENCFF448WJQ.tabix.bed.gz 1.41 MB 28854c6e4e4a7875e45b8d5b7ab8bdac
ENCFF448WJQ.tabix.bed.gz.tbi 536.59 KB 2f15c2ad71cf6a57b57911a4367ab481
genomic_resource.yaml 1.17 KB 554457efa66f1e461e41569b5278d765
statistics/