Resource
| Id | DNase-seq/ENCSR246VSO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR246VSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF556BGQ|/files/ENCFF556BGQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR246VSO | float |
DNase-seq_ENCSR246VSO |
DNase-seq ENCSR246VSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
|
 |
[0.0681, 36.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13710054 | 0.43% | 75388 |
| chr1 | 1360162 | 0.55% | 7473 |
| chr2 | 1010018 | 0.42% | 5663 |
| chr3 | 808062 | 0.41% | 4463 |
| chr4 | 486638 | 0.26% | 2688 |
| chr5 | 647745 | 0.36% | 3645 |
| chr6 | 767701 | 0.45% | 4200 |
| chr7 | 629565 | 0.40% | 3491 |
| chr8 | 531680 | 0.37% | 2972 |
| chr9 | 592067 | 0.43% | 3256 |
| chr10 | 668298 | 0.50% | 3715 |
| chr11 | 720061 | 0.53% | 3939 |
| chr12 | 692425 | 0.52% | 3774 |
| chr13 | 274166 | 0.24% | 1536 |
| chr14 | 448051 | 0.42% | 2451 |
| chr15 | 473149 | 0.46% | 2613 |
| chr16 | 530894 | 0.59% | 2908 |
| chr17 | 788333 | 0.95% | 4255 |
| chr18 | 238155 | 0.30% | 1327 |
| chr19 | 800301 | 1.37% | 4144 |
| chr20 | 415445 | 0.64% | 2310 |
| chr21 | 174716 | 0.37% | 970 |
| chr22 | 328393 | 0.65% | 1779 |
| chrX | 323619 | 0.21% | 1813 |
| chrY | 410 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75388 | 2 | 820 | 181.86 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF528XPM.bed.gz | 835.52 KB | f0da45d9cf8f7d0d13be13a44398766a |
| ENCFF528XPM.tabix.bed.gz | 758.63 KB | 69c66cde8e3a5dba24ba8e2e4e6194d8 |
| ENCFF528XPM.tabix.bed.gz.tbi | 316.59 KB | f714cee21c316ddaf2e37e2aebb355a1 |
| genomic_resource.yaml | 2.08 KB | 76bef4f992b2b8a62e79a77742e46078 |
| statistics/ |