Resource

Id DNase-seq/ENCSR245AXWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR245AXW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR245AXW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-20T23:45:54.142710+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR245AXW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR245AXW float

DNase-seq_ENCSR245AXW
DNase-seq ENCSR245AXW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR245AXW [0.0508, 33.8]
n
15,121,131
mean
2.77
sd
3.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 151211310.47% 76968
chr1 1471545 0.59% 7420
chr2 1206316 0.50% 6229
chr3 823294 0.42% 4177
chr4 476552 0.25% 2403
chr5 702466 0.39% 3560
chr6 881352 0.52% 4494
chr7 657314 0.41% 3426
chr8 589871 0.41% 3053
chr9 633843 0.46% 3229
chr10 758418 0.57% 3872
chr11 806749 0.60% 4088
chr12 722712 0.54% 3635
chr13 294156 0.26% 1490
chr14 553474 0.52% 2856
chr15 496940 0.49% 2590
chr16 589015 0.65% 2980
chr17 825933 0.99% 4142
chr18 243924 0.30% 1262
chr19 870663 1.49% 4301
chr20 456524 0.71% 2358
chr21 226854 0.49% 1166
chr22 376874 0.74% 1912
chrX 441857 0.28% 2249
chrY 14485 0.03% 76
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76968 1 1060 196.46 180
global segment-length histogram

Files

Filename Size md5
ENCFF193OWF.bed.gz 850.17 KB acca8d52e9b77110ccd4f7a5de15eb46
ENCFF193OWF.tabix.bed.gz 781.54 KB 64e1fa8236e42b1051a3a6442ac08cda
ENCFF193OWF.tabix.bed.gz.tbi 269.48 KB fbedc3b27586570b56260b5e345e8632
genomic_resource.yaml 1.83 KB 3883580dbd75d6d3416654d9b8a6e195
statistics/