Resource

Id DNase-seq/ENCSR242RPQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR242RPQ [biosample_summary="Homo sapiens pancreas tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR242RPQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female child (16 years)
  • date_created: 2019-11-01T19:05:04.122980+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR242RPQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR242RPQ float

DNase-seq_ENCSR242RPQ

DNase-seq ENCSR242RPQ [biosample_summary="Homo sapiens pancreas tissue female child (16 years)"]
HISTOGRAM FOR DNase-seq_ENCSR242RPQ [0.0434, 29.7]
n
18,384,907
mean
1.98
sd
2.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 183849070.57% 95237
chr1 1764277 0.71% 9085
chr2 1435661 0.59% 7492
chr3 1041646 0.53% 5427
chr4 711574 0.37% 3724
chr5 859944 0.47% 4512
chr6 960328 0.56% 5046
chr7 906189 0.57% 4716
chr8 798166 0.55% 4170
chr9 888806 0.64% 4499
chr10 915186 0.68% 4784
chr11 1051309 0.78% 5358
chr12 807418 0.61% 4216
chr13 336327 0.29% 1786
chr14 657453 0.61% 3384
chr15 646155 0.63% 3409
chr16 676940 0.75% 3464
chr17 988796 1.19% 5018
chr18 349931 0.44% 1842
chr19 931006 1.59% 4621
chr20 516480 0.80% 2704
chr21 246931 0.53% 1308
chr22 451258 0.89% 2319
chrX 442537 0.28% 2348
chrY 589 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95237 1 1003 193.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF314WDG.bed.gz 1.02 MB cea778b6d3739eda98dc25e899690aca
ENCFF314WDG.tabix.bed.gz 958.61 KB d5a6edc1eee895566ca67c6ba0227435
ENCFF314WDG.tabix.bed.gz.tbi 335.02 KB 6ada080da7e0b1d3d2513ff0d9bfebcb
genomic_resource.yaml 1.21 KB c0142d2be9ff0e789616f4c018f14dbd
statistics/