Resource

Id DNase-seq/ENCSR240TPIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR240TPI [biosample_summary="Homo sapiens ELR"]
Description
Labels
  • accession: ENCSR240TPI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007750/
  • biosample_summary: Homo sapiens ELR
  • date_created: 2014-10-01T04:44:29.525198+00:00
  • date_released: 2015-10-14
  • doi: 10.17989/ENCSR240TPI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR240TPI float

DNase-seq_ENCSR240TPI
DNase-seq ENCSR240TPI [biosample_summary="Homo sapiens ELR"]
 HISTOGRAM FOR DNase-seq_ENCSR240TPI [0.0175, 34.8]
n
47,689,293
mean
1.88
sd
2.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 476892931.48% 260287
chr1 4483746 1.80% 24449
chr2 4051371 1.67% 22250
chr3 3207573 1.62% 17603
chr4 2655507 1.40% 14828
chr5 2761906 1.52% 15104
chr6 3022856 1.77% 16343
chr7 2367458 1.49% 12984
chr8 2288330 1.58% 12531
chr9 1979948 1.43% 10798
chr10 2188103 1.64% 11946
chr11 2353836 1.74% 12820
chr12 2397521 1.80% 13025
chr13 1406586 1.23% 7827
chr14 1442865 1.35% 7842
chr15 1476616 1.45% 7992
chr16 1343453 1.49% 7240
chr17 1983347 2.38% 10652
chr18 993835 1.24% 5519
chr19 1455539 2.48% 7702
chr20 1175238 1.82% 6337
chr21 545027 1.17% 2994
chr22 761068 1.50% 4084
chrX 1299465 0.83% 7147
chrY 48099 0.08% 270
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 260287 1 900 183.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF127SQZ.bed.gz 2.82 MB 9a7526cf3fd56c27990ef7afbdb03411
ENCFF127SQZ.tabix.bed.gz 2.58 MB a9014994e84b90da5b602070b87b4f96
ENCFF127SQZ.tabix.bed.gz.tbi 704.18 KB bdc6222157cd0e22b39e08405b05c578
genomic_resource.yaml 1.69 KB 24b359209bf9958d917db7443d30877a
statistics/