Resource

Id DNase-seq/ENCSR237BOFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR237BOF [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR237BOF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)
  • date_created: 2020-04-11T19:51:03.199341+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR237BOF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR237BOF float

DNase-seq_ENCSR237BOF
DNase-seq ENCSR237BOF [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR237BOF [0.169, 72]
n
8,294,067
mean
7.33
sd
8.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82940670.26% 43976
chr1 856338 0.34% 4477
chr2 569326 0.24% 3034
chr3 425669 0.21% 2227
chr4 294254 0.15% 1542
chr5 349568 0.19% 1848
chr6 449728 0.26% 2386
chr7 383571 0.24% 2054
chr8 303059 0.21% 1624
chr9 334651 0.24% 1799
chr10 349412 0.26% 1852
chr11 463584 0.34% 2475
chr12 418026 0.31% 2193
chr13 154975 0.14% 806
chr14 320245 0.30% 1693
chr15 258115 0.25% 1379
chr16 331400 0.37% 1774
chr17 502530 0.60% 2691
chr18 124689 0.16% 670
chr19 594364 1.01% 3092
chr20 236556 0.37% 1288
chr21 117072 0.25% 623
chr22 212483 0.42% 1154
chrX 236306 0.15% 1252
chrY 8146 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43976 1 860 188.6 180
global segment-length histogram

Files

Filename Size md5
ENCFF783EHW.bed.gz 495.68 KB 90973f4e4869731e095f47e24a59a25c
ENCFF783EHW.tabix.bed.gz 452.11 KB 88d027d743e0de54f20345ca45b52609
ENCFF783EHW.tabix.bed.gz.tbi 200.9 KB a31c4f81ea3223899f33988013592d7b
genomic_resource.yaml 1.32 KB a96b139ec05fe132648374e683324b2d
statistics/