Resource

Id DNase-seq/ENCSR236KPKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR236KPK [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR236KPK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (47 years)
  • date_created: 2019-11-01T19:22:26.609448+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR236KPK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR236KPK float

DNase-seq_ENCSR236KPK

DNase-seq ENCSR236KPK [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"]
HISTOGRAM FOR DNase-seq_ENCSR236KPK [0.0372, 37.7]
n
22,251,437
mean
2.41
sd
3.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 222514370.69% 106799
chr1 2198360 0.88% 10422
chr2 1599176 0.66% 7855
chr3 1226280 0.62% 6029
chr4 818661 0.43% 4014
chr5 1009813 0.56% 4965
chr6 1081727 0.63% 5283
chr7 1084724 0.68% 5235
chr8 930729 0.64% 4533
chr9 1056887 0.76% 5007
chr10 1114886 0.83% 5332
chr11 1244740 0.92% 5851
chr12 1000120 0.75% 4815
chr13 441227 0.39% 2180
chr14 746324 0.70% 3572
chr15 779848 0.76% 3784
chr16 997637 1.10% 4625
chr17 1293120 1.55% 6035
chr18 387310 0.48% 1944
chr19 1142052 1.95% 5192
chr20 659221 1.02% 3186
chr21 287395 0.62% 1392
chr22 611997 1.20% 2860
chrX 538583 0.35% 2684
chrY 620 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106799 1 1220 208.35 200
global segment-length histogram

Files

Filename Size md5
ENCFF631BPK.bed.gz 1.16 MB cc205c6878c68f7e6f834eed1a19151b
ENCFF631BPK.tabix.bed.gz 1.06 MB e2d8d2fb4d4cb7b3d4a786c60d53e158
ENCFF631BPK.tabix.bed.gz.tbi 383.73 KB a52db6005a47dfc90bc9aac22225356e
genomic_resource.yaml 1.21 KB 49be3ccfdfaab3f188944b00a198dd1f
statistics/