Resource

Id DNase-seq/ENCSR235OZXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR235OZX [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR235OZX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:51.448758+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR235OZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR235OZX float

DNase-seq_ENCSR235OZX
DNase-seq ENCSR235OZX [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR235OZX [0.551, 80.8]
n
5,442,350
mean
10.8
sd
9.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 54423500.17% 30348
chr1 564283 0.23% 3153
chr2 379243 0.16% 2113
chr3 291988 0.15% 1654
chr4 178036 0.09% 993
chr5 242655 0.13% 1330
chr6 295214 0.17% 1663
chr7 254014 0.16% 1403
chr8 191278 0.13% 1088
chr9 219816 0.16% 1232
chr10 225300 0.17% 1279
chr11 291160 0.22% 1634
chr12 277592 0.21% 1527
chr13 105483 0.09% 584
chr14 189612 0.18% 1053
chr15 177379 0.17% 995
chr16 229301 0.25% 1272
chr17 335259 0.40% 1898
chr18 81696 0.10% 451
chr19 411864 0.70% 2221
chr20 150075 0.23% 846
chr21 62741 0.13% 356
chr22 134992 0.27% 756
chrX 153369 0.10% 847
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30348 10 663 179.33 180
global segment-length histogram

Files

Filename Size md5
ENCFF615CMQ.bed.gz 332.55 KB d737c37a7f8defd1dc561b3d1154649c
ENCFF615CMQ.tabix.bed.gz 298.65 KB 0eaa6b5a041df2040610198f97e75162
ENCFF615CMQ.tabix.bed.gz.tbi 174.54 KB e926e42d07772ae95b066dfa52fed49c
genomic_resource.yaml 1.88 KB 914151a2a03eda7074bb55ff9efe5aec
statistics/