Resource

Id DNase-seq/ENCSR233DFTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR233DFT [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
Description
Labels
  • accession: ENCSR233DFT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (83 years)
  • date_created: 2021-04-01T15:48:57.623400+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR233DFT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (83 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR233DFT float

DNase-seq_ENCSR233DFT
DNase-seq ENCSR233DFT [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR233DFT [0.0258, 38.9]
n
26,269,232
mean
2.1
sd
3.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 262692320.82% 137192
chr1 2440641 0.98% 12626
chr2 2201404 0.91% 11574
chr3 1463380 0.74% 7703
chr4 952427 0.50% 4922
chr5 1309141 0.72% 6903
chr6 1243547 0.73% 6504
chr7 1331062 0.84% 7036
chr8 1106778 0.76% 5784
chr9 1197853 0.87% 6270
chr10 1461254 1.09% 7605
chr11 1458298 1.08% 7597
chr12 1174886 0.88% 6078
chr13 580239 0.51% 3068
chr14 864109 0.81% 4470
chr15 931208 0.91% 4831
chr16 1011043 1.12% 5340
chr17 1308698 1.57% 6822
chr18 606783 0.75% 3153
chr19 1116502 1.90% 5693
chr20 858666 1.33% 4572
chr21 328615 0.70% 1759
chr22 729412 1.44% 3776
chrX 571323 0.37% 2985
chrY 21963 0.04% 121
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 137192 1 1080 191.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF183VMB.bed.gz 1.46 MB 43deadc30e3801f07d9a4cef31e1902c
ENCFF183VMB.tabix.bed.gz 1.34 MB 437ee0edca9537e7f39ea86b35f12658
ENCFF183VMB.tabix.bed.gz.tbi 411.3 KB 0ae649240a102b36c670135cff69979f
genomic_resource.yaml 1.25 KB 3f5857314e4c440b09beeb66e5287fd8
statistics/