Resource

Id DNase-seq/ENCSR228VNQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR228VNQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)"]
Description
Labels
  • accession: ENCSR228VNQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002327/
  • biosample_summary: Homo sapiens mammary epithelial cell female adult (18 years)
  • date_created: 2015-09-16T21:42:11.523564+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR228VNQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (18 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR228VNQ float

DNase-seq_ENCSR228VNQ
DNase-seq ENCSR228VNQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR228VNQ [0.034, 20.9]
n
43,100,569
mean
1.49
sd
1.93

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 431005691.34% 209422
chr1 4070093 1.63% 19621
chr2 3526004 1.46% 17342
chr3 2911938 1.47% 14170
chr4 2350837 1.24% 11597
chr5 2511780 1.38% 12272
chr6 2676714 1.57% 12894
chr7 2139418 1.34% 10534
chr8 2040765 1.41% 9971
chr9 1854763 1.34% 8980
chr10 2050461 1.53% 10015
chr11 2151207 1.59% 10483
chr12 2187104 1.64% 10537
chr13 1151184 1.01% 5644
chr14 1302737 1.22% 6273
chr15 1399291 1.37% 6789
chr16 1277156 1.41% 6163
chr17 1669634 2.01% 7889
chr18 1065784 1.33% 5195
chr19 1184674 2.02% 5570
chr20 1103392 1.71% 5383
chr21 483997 1.04% 2326
chr22 677155 1.33% 3262
chrX 1313212 0.84% 6503
chrY 1269 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 209422 1 1060 205.81 200
global segment-length histogram

Files

Filename Size md5
ENCFF260YRE.bed.gz 2.24 MB 4746f4052a2fc2380f2ad0a82f7edea9
ENCFF260YRE.tabix.bed.gz 2.04 MB f577d6946c6a726d00337cf5d2984a55
ENCFF260YRE.tabix.bed.gz.tbi 668.9 KB 330709dccc37828648590ade5b280e2c
genomic_resource.yaml 1.24 KB ee62396d672f8e7d1c8bae818b6f02c3
statistics/