Resource

Id DNase-seq/ENCSR226JLKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR226JLK [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR226JLK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000863/
  • biosample_summary: Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours
  • date_created: 2018-11-29T17:38:16.086278+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR226JLK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR226JLK float

DNase-seq_ENCSR226JLK
DNase-seq ENCSR226JLK [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR226JLK [0.0274, 37.9]
n
36,142,739
mean
2.45
sd
3.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 361427391.12% 201758
chr1 3449828 1.39% 19309
chr2 2953761 1.22% 16530
chr3 2412454 1.22% 13479
chr4 1607980 0.85% 9048
chr5 1943572 1.07% 10909
chr6 2282093 1.34% 12647
chr7 1807326 1.13% 10121
chr8 1658919 1.14% 9251
chr9 1510741 1.09% 8471
chr10 1802323 1.35% 10061
chr11 1746556 1.29% 9737
chr12 1887084 1.42% 10533
chr13 852676 0.75% 4813
chr14 1131901 1.06% 6336
chr15 1211508 1.19% 6750
chr16 1135852 1.26% 6329
chr17 1636283 1.97% 9054
chr18 751494 0.94% 4241
chr19 1270349 2.17% 6902
chr20 964233 1.50% 5382
chr21 451761 0.97% 2466
chr22 642394 1.26% 3542
chrX 989958 0.63% 5611
chrY 41693 0.07% 236
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 201758 3 900 179.14 180
global segment-length histogram

Files

Filename Size md5
ENCFF424KQR.bed.gz 2.16 MB 9544e7c1d86752e00458da161e0d845c
ENCFF424KQR.tabix.bed.gz 1.97 MB a3dd9e2a2483f9fa639a2fd139bf4d18
ENCFF424KQR.tabix.bed.gz.tbi 551.43 KB 42450c6550cc5f241f974110fdf5bc1f
genomic_resource.yaml 1.46 KB 035fa797ef0c09a37c7b87b864f52753
statistics/