Resource

Id DNase-seq/ENCSR223KKXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR223KKX [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR223KKX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-18T05:26:51.524692+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR223KKX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR223KKX float

DNase-seq_ENCSR223KKX
DNase-seq ENCSR223KKX [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR223KKX [0.0528, 36.4]
n
22,631,454
mean
2.52
sd
3.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 226314540.70% 96028
chr1 2251104 0.90% 9297
chr2 1767738 0.73% 7544
chr3 1063366 0.54% 4528
chr4 731468 0.38% 3115
chr5 1063659 0.59% 4566
chr6 1194672 0.70% 4947
chr7 1053589 0.66% 4476
chr8 853278 0.59% 3718
chr9 960615 0.69% 4129
chr10 1039707 0.78% 4486
chr11 1245363 0.92% 5303
chr12 1042028 0.78% 4389
chr13 439908 0.38% 1850
chr14 796529 0.74% 3461
chr15 789064 0.77% 3416
chr16 925273 1.02% 3940
chr17 1472763 1.77% 6104
chr18 362867 0.45% 1562
chr19 1208616 2.06% 4962
chr20 679459 1.05% 2975
chr21 403624 0.86% 1743
chr22 711044 1.40% 3112
chrX 575528 0.37% 2404
chrY 192 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96028 1 1200 235.68 217
global segment-length histogram

Files

Filename Size md5
ENCFF417CJI.bed.gz 1019.01 KB 1d56a1b6cb499e08361947658ad8bde9
ENCFF417CJI.tabix.bed.gz 953.93 KB b1c47cae5c655ed20c6c88c982428d6d
ENCFF417CJI.tabix.bed.gz.tbi 266.96 KB f37aa926fadbbc994dc456101a9a27ab
genomic_resource.yaml 1.72 KB e46306adb45c1d5acfe133a149bb6d50
statistics/