Resource

Id DNase-seq/ENCSR218FSPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR218FSP [biosample_summary="Homo sapiens WERI-Rb-1"]
Description
Labels
  • accession: ENCSR218FSP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005715/
  • biosample_summary: Homo sapiens WERI-Rb-1
  • date_created: 2019-09-14T19:53:53.951679+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR218FSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR218FSP float

DNase-seq_ENCSR218FSP
DNase-seq ENCSR218FSP [biosample_summary="Homo sapiens WERI-Rb-1"]
 HISTOGRAM FOR DNase-seq_ENCSR218FSP [0.0413, 62]
n
28,548,850
mean
2.19
sd
3.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 285488500.89% 151809
chr1 3073948 1.23% 16047
chr2 2205294 0.91% 11787
chr3 1555339 0.78% 8460
chr4 1285341 0.68% 6969
chr5 1465411 0.81% 7926
chr6 1628228 0.95% 8656
chr7 1354548 0.85% 7274
chr8 1210648 0.83% 6598
chr9 1365875 0.99% 7247
chr10 1242257 0.93% 6696
chr11 1475325 1.09% 7874
chr12 1296875 0.97% 6913
chr13 736122 0.64% 3927
chr14 888743 0.83% 4677
chr15 894317 0.88% 4780
chr16 1014582 1.12% 5367
chr17 1617941 1.94% 8266
chr18 649234 0.81% 3474
chr19 1150707 1.96% 5909
chr20 748294 1.16% 3971
chr21 396182 0.85% 2055
chr22 616425 1.21% 3276
chrX 676172 0.43% 3651
chrY 1042 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 151809 1 1180 188.06 180
global segment-length histogram

Files

Filename Size md5
ENCFF271TYA.bed.gz 1.64 MB b4a13be93170c60bba53d277694caf3e
ENCFF271TYA.tabix.bed.gz 1.5 MB 6bdcbec1acb031a5f37e68d6d384b498
ENCFF271TYA.tabix.bed.gz.tbi 507.64 KB ab1bf47bebf16e70020c378a7f8fbe44
genomic_resource.yaml 1.08 KB f15a57d15e8d4ce8355d91be2b28ea17
statistics/