Resource
| Id | DNase-seq/ENCSR218FJD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (30 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF285DGZ|/files/ENCFF285DGZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR218FJD | float |
DNase-seq_ENCSR218FJD |
DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
|
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[0.164, 28.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6133683 | 0.19% | 33768 |
| chr1 | 629852 | 0.25% | 3485 |
| chr2 | 409725 | 0.17% | 2255 |
| chr3 | 323003 | 0.16% | 1788 |
| chr4 | 199788 | 0.11% | 1091 |
| chr5 | 263545 | 0.15% | 1438 |
| chr6 | 348914 | 0.20% | 1941 |
| chr7 | 276091 | 0.17% | 1538 |
| chr8 | 219239 | 0.15% | 1222 |
| chr9 | 239933 | 0.17% | 1326 |
| chr10 | 266495 | 0.20% | 1460 |
| chr11 | 320813 | 0.24% | 1771 |
| chr12 | 313823 | 0.24% | 1717 |
| chr13 | 120904 | 0.11% | 651 |
| chr14 | 215313 | 0.20% | 1194 |
| chr15 | 192603 | 0.19% | 1065 |
| chr16 | 266261 | 0.29% | 1453 |
| chr17 | 391970 | 0.47% | 2167 |
| chr18 | 86404 | 0.11% | 482 |
| chr19 | 469635 | 0.80% | 2486 |
| chr20 | 167720 | 0.26% | 953 |
| chr21 | 70542 | 0.15% | 393 |
| chr22 | 159002 | 0.31% | 890 |
| chrX | 174366 | 0.11% | 964 |
| chrY | 7742 | 0.01% | 38 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33768 | 14 | 800 | 181.64 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF201SWK.bed.gz | 372.86 KB | 1f5c2f8f3425c76f22e17d339de76654 |
| ENCFF201SWK.tabix.bed.gz | 340.09 KB | 8d107cfd5dc3bec8d16a312cbc3f88a0 |
| ENCFF201SWK.tabix.bed.gz.tbi | 179.97 KB | 006ae883a69044f61760798f9706ffa9 |
| genomic_resource.yaml | 2.0 KB | 0eb12066951f728ddaccf50385a9e24a |
| statistics/ |
