Resource

Id DNase-seq/ENCSR218FJDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR218FJD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (30 years)
  • date_created: 2020-04-12T19:00:09.191147+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR218FJD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR218FJD float

DNase-seq_ENCSR218FJD

DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
HISTOGRAM FOR DNase-seq_ENCSR218FJD [0.164, 28.4]
n
6,133,683
mean
4.22
sd
3.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61336830.19% 33768
chr1 629852 0.25% 3485
chr2 409725 0.17% 2255
chr3 323003 0.16% 1788
chr4 199788 0.11% 1091
chr5 263545 0.15% 1438
chr6 348914 0.20% 1941
chr7 276091 0.17% 1538
chr8 219239 0.15% 1222
chr9 239933 0.17% 1326
chr10 266495 0.20% 1460
chr11 320813 0.24% 1771
chr12 313823 0.24% 1717
chr13 120904 0.11% 651
chr14 215313 0.20% 1194
chr15 192603 0.19% 1065
chr16 266261 0.29% 1453
chr17 391970 0.47% 2167
chr18 86404 0.11% 482
chr19 469635 0.80% 2486
chr20 167720 0.26% 953
chr21 70542 0.15% 393
chr22 159002 0.31% 890
chrX 174366 0.11% 964
chrY 7742 0.01% 38
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33768 14 800 181.64 180
global segment-length histogram

Files

Filename Size md5
ENCFF201SWK.bed.gz 372.86 KB 1f5c2f8f3425c76f22e17d339de76654
ENCFF201SWK.tabix.bed.gz 340.09 KB 8d107cfd5dc3bec8d16a312cbc3f88a0
ENCFF201SWK.tabix.bed.gz.tbi 179.97 KB 006ae883a69044f61760798f9706ffa9
genomic_resource.yaml 2.0 KB 0eb12066951f728ddaccf50385a9e24a
statistics/