Resource

Id DNase-seq/ENCSR217RVHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR217RVH [biosample_summary="Homo sapiens fibroblast of skin of right quadriceps male embryo (97 days)"]
Description
Labels
  • accession: ENCSR217RVH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000523/
  • biosample_summary: Homo sapiens fibroblast of skin of right quadriceps male embryo (97 days)
  • date_created: 2015-09-16T21:42:12.520235+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR217RVH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR217RVH float

DNase-seq_ENCSR217RVH
DNase-seq ENCSR217RVH [biosample_summary="Homo sapiens fibroblast of skin of right quadriceps male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR217RVH [0.0345, 43.4]
n
46,049,654
mean
1.68
sd
2.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 460496541.43% 232924
chr1 4144645 1.66% 21096
chr2 3886032 1.60% 19646
chr3 3257770 1.64% 16468
chr4 2631334 1.38% 13407
chr5 2873864 1.58% 14464
chr6 2938792 1.72% 14684
chr7 2308962 1.45% 11715
chr8 2248957 1.55% 11340
chr9 1987239 1.44% 9992
chr10 2226413 1.66% 11237
chr11 2259843 1.67% 11408
chr12 2258067 1.69% 11419
chr13 1337002 1.17% 6777
chr14 1413759 1.32% 7176
chr15 1543879 1.51% 7753
chr16 1229932 1.36% 6322
chr17 1632604 1.96% 8222
chr18 1147320 1.43% 5808
chr19 1049817 1.79% 5286
chr20 1096371 1.70% 5556
chr21 563662 1.21% 2828
chr22 628957 1.24% 3229
chrX 1327499 0.85% 6804
chrY 56934 0.10% 287
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 232924 2 1100 197.7 200
global segment-length histogram

Files

Filename Size md5
ENCFF458CFD.bed.gz 2.51 MB ae7eb7c90832792f211431f55c8d3b3b
ENCFF458CFD.tabix.bed.gz 2.29 MB e581996a0347ca966c3d0c4559e0074c
ENCFF458CFD.tabix.bed.gz.tbi 689.07 KB aa6bf06c9edbf96ccc2d0ef498ac6c24
genomic_resource.yaml 1.28 KB b3a9cd94bd7b264df4bac52b3cf6a00b
statistics/