Resource
| Id | DNase-seq/ENCSR217PZP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR217PZP [biosample_summary="Homo sapiens T-cell male adult (26 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: peaks audit_warning: Alignment file {ENCFF906TNE|/files/ENCFF906TNE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39629972 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR217PZP | float |
DNase-seq_ENCSR217PZP |
DNase-seq ENCSR217PZP [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
|
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[0.304, 93.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8716577 | 0.27% | 46170 |
| chr1 | 874584 | 0.35% | 4635 |
| chr2 | 624204 | 0.26% | 3310 |
| chr3 | 474091 | 0.24% | 2514 |
| chr4 | 302389 | 0.16% | 1601 |
| chr5 | 392848 | 0.22% | 2093 |
| chr6 | 520152 | 0.30% | 2746 |
| chr7 | 410772 | 0.26% | 2196 |
| chr8 | 326714 | 0.23% | 1765 |
| chr9 | 346284 | 0.25% | 1825 |
| chr10 | 394033 | 0.29% | 2082 |
| chr11 | 437593 | 0.32% | 2332 |
| chr12 | 442933 | 0.33% | 2323 |
| chr13 | 187172 | 0.16% | 986 |
| chr14 | 304571 | 0.28% | 1615 |
| chr15 | 276311 | 0.27% | 1484 |
| chr16 | 354009 | 0.39% | 1887 |
| chr17 | 525826 | 0.63% | 2764 |
| chr18 | 139161 | 0.17% | 755 |
| chr19 | 552151 | 0.94% | 2832 |
| chr20 | 247982 | 0.38% | 1346 |
| chr21 | 108273 | 0.23% | 573 |
| chr22 | 214366 | 0.42% | 1127 |
| chrX | 248342 | 0.16% | 1318 |
| chrY | 11816 | 0.02% | 61 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46170 | 5 | 660 | 188.79 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF156CAM.bed.gz | 512.54 KB | 5e0d47eaf260c0faf463c0535333b9fb |
| ENCFF156CAM.tabix.bed.gz | 464.36 KB | cd3e06714b418c8721e23d36ab066018 |
| ENCFF156CAM.tabix.bed.gz.tbi | 233.18 KB | d8d75bd61f4e9ca0b65f57fde0e6dba1 |
| genomic_resource.yaml | 1.79 KB | 208d77b5dbc8ce5cb4bcd43cee37bb36 |
| statistics/ |
