Resource

Id DNase-seq/ENCSR217OHAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR217OHA [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR217OHA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:53.705952+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR217OHA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR217OHA float

DNase-seq_ENCSR217OHA
DNase-seq ENCSR217OHA [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR217OHA [0.0475, 23.1]
n
23,261,259
mean
1.56
sd
2.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 232612590.72% 120730
chr1 2130932 0.86% 10948
chr2 2012267 0.83% 10371
chr3 1082093 0.55% 5637
chr4 832973 0.44% 4216
chr5 1075579 0.59% 5601
chr6 984351 0.58% 5118
chr7 1212893 0.76% 6260
chr8 1013488 0.70% 5222
chr9 1066160 0.77% 5532
chr10 1429228 1.07% 7434
chr11 1271426 0.94% 6607
chr12 956289 0.72% 4947
chr13 451386 0.39% 2386
chr14 759915 0.71% 3973
chr15 904324 0.89% 4756
chr16 910470 1.01% 4913
chr17 1246717 1.50% 6537
chr18 460430 0.57% 2389
chr19 1046934 1.79% 5319
chr20 784317 1.22% 4172
chr21 339682 0.73% 1723
chr22 779008 1.53% 4006
chrX 509425 0.33% 2656
chrY 972 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120730 1 1020 192.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF721HSD.bed.gz 1.24 MB 8beee484080d5b21fba91ec18e0a50f1
ENCFF721HSD.tabix.bed.gz 1.14 MB f74dd38b7b9d20e19c4b225db4185a02
ENCFF721HSD.tabix.bed.gz.tbi 310.37 KB 2d22fa057fd67245486265a1acd10c69
genomic_resource.yaml 1.31 KB d22799794ebfe6b4c5c86e6d62ca815e
statistics/