Resource
| Id | DNase-seq/ENCSR214NLQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR214NLQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: peaks audit_internal_action: Released analysis {ENCAN800QKW|/analyses/ENCAN800QKW/} has in progress subobject document {ee389410-0adf-48e5-b53e-fd829dad63b0|/documents/ee389410-0adf-48e5-b53e-fd829dad63b0/} audit_internal_action: Released analysis {ENCAN800QKW|/analyses/ENCAN800QKW/} has in progress subobject document {fc2c0477-32cc-45e5-9fb0-260e5901c990|/documents/fc2c0477-32cc-45e5-9fb0-260e5901c990/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF803BUE|/files/ENCFF803BUE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR214NLQ | float |
DNase-seq_ENCSR214NLQ |
DNase-seq ENCSR214NLQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
|
 |
[0.0517, 29] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19242212 | 0.60% | 102240 |
| chr1 | 1837031 | 0.74% | 9717 |
| chr2 | 1519906 | 0.63% | 8167 |
| chr3 | 1161973 | 0.59% | 6231 |
| chr4 | 697690 | 0.37% | 3807 |
| chr5 | 1016768 | 0.56% | 5421 |
| chr6 | 1016288 | 0.59% | 5469 |
| chr7 | 873017 | 0.55% | 4742 |
| chr8 | 781468 | 0.54% | 4241 |
| chr9 | 860645 | 0.62% | 4574 |
| chr10 | 987757 | 0.74% | 5276 |
| chr11 | 1080840 | 0.80% | 5640 |
| chr12 | 874929 | 0.66% | 4629 |
| chr13 | 422619 | 0.37% | 2292 |
| chr14 | 635891 | 0.59% | 3338 |
| chr15 | 708303 | 0.69% | 3785 |
| chr16 | 734375 | 0.81% | 3847 |
| chr17 | 1005834 | 1.21% | 5149 |
| chr18 | 363719 | 0.45% | 2020 |
| chr19 | 899258 | 1.53% | 4441 |
| chr20 | 570604 | 0.89% | 3056 |
| chr21 | 239767 | 0.51% | 1282 |
| chr22 | 449462 | 0.88% | 2380 |
| chrX | 485950 | 0.31% | 2636 |
| chrY | 18118 | 0.03% | 100 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102240 | 2 | 960 | 188.21 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF038ZBF.bed.gz | 1.09 MB | bdd8150dd43dd9b24b4a9594cf4236c8 |
| ENCFF038ZBF.tabix.bed.gz | 1019.28 KB | bcab440ce4e138c1727f399d9ba2aa9a |
| ENCFF038ZBF.tabix.bed.gz.tbi | 387.65 KB | 234a81ca1a81d8d071191219396fa85b |
| genomic_resource.yaml | 2.48 KB | 01f0f4360470bf9c218f5341f8cc9517 |
| statistics/ |