Resource

Id DNase-seq/ENCSR208YDKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR208YDK [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours"]
Description
Labels
  • accession: ENCSR208YDK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000667/
  • biosample_summary: Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours
  • date_created: 2021-11-03T04:54:29.752570+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR208YDK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR208YDK float

DNase-seq_ENCSR208YDK
DNase-seq ENCSR208YDK [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR208YDK [0.0845, 30.9]
n
14,686,334
mean
2.7
sd
2.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 146863340.46% 65824
chr1 1475433 0.59% 6492
chr2 1060687 0.44% 4756
chr3 806011 0.41% 3620
chr4 553210 0.29% 2446
chr5 672933 0.37% 3026
chr6 894596 0.52% 3909
chr7 674688 0.42% 3081
chr8 574930 0.40% 2626
chr9 614911 0.44% 2769
chr10 677451 0.51% 3057
chr11 730461 0.54% 3318
chr12 750779 0.56% 3374
chr13 314819 0.28% 1415
chr14 489483 0.46% 2210
chr15 498211 0.49% 2293
chr16 568759 0.63% 2596
chr17 846322 1.02% 3761
chr18 258585 0.32% 1153
chr19 836659 1.43% 3638
chr20 402620 0.62% 1836
chr21 175923 0.38% 792
chr22 343361 0.68% 1543
chrX 447219 0.29% 2031
chrY 18283 0.03% 82
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65824 1 980 223.12 200
global segment-length histogram

Files

Filename Size md5
ENCFF975INV.bed.gz 714.09 KB ce4d96f28cfc4891f92835ba7157abef
ENCFF975INV.tabix.bed.gz 663.36 KB 6f38e92344259911d5ffa43a8cf91c2a
ENCFF975INV.tabix.bed.gz.tbi 283.57 KB fbf5ba9d43b7b551da8e6f884f43eba3
genomic_resource.yaml 1.85 KB 99ef514dff5e2bb47e9b8c29e0f4435f
statistics/