Resource

Id DNase-seq/ENCSR208DMXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR208DMX [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR208DMX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:23.409800+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR208DMX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR208DMX float

DNase-seq_ENCSR208DMX
DNase-seq ENCSR208DMX [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR208DMX [0.0169, 28.9]
n
52,856,062
mean
1.21
sd
2.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 528560621.64% 262985
chr1 4856553 1.95% 24028
chr2 4214955 1.74% 21240
chr3 3293311 1.66% 16742
chr4 2568167 1.35% 13128
chr5 2821411 1.55% 14223
chr6 3041601 1.78% 15308
chr7 2642747 1.66% 13298
chr8 2408987 1.66% 12063
chr9 2330064 1.68% 11554
chr10 2580866 1.93% 12847
chr11 2776567 2.06% 13616
chr12 2534610 1.90% 12604
chr13 1378616 1.21% 7074
chr14 1725067 1.61% 8485
chr15 1685571 1.65% 8327
chr16 1782923 1.97% 8763
chr17 2441576 2.93% 11631
chr18 1138129 1.42% 5787
chr19 1962461 3.35% 9048
chr20 1471788 2.28% 7237
chr21 648114 1.39% 3238
chr22 1070634 2.11% 5176
chrX 1479147 0.95% 7553
chrY 2197 <0.01% 15
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 262985 1 1120 200.99 200
global segment-length histogram

Files

Filename Size md5
ENCFF289OBR.bed.gz 2.8 MB 3a1cffdfcf519f6cfbb04c950ca2dd62
ENCFF289OBR.tabix.bed.gz 2.57 MB 386600e2e7f2910ae80fb0cf834739c2
ENCFF289OBR.tabix.bed.gz.tbi 725.43 KB a7075bf8baa7f26279648771140f85ae
genomic_resource.yaml 1.21 KB 321add012723a6c3d0b9f5c36cefa0cd
statistics/