Resource

Id DNase-seq/ENCSR207CQHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR207CQH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
Description
Labels
  • accession: ENCSR207CQH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours
  • date_created: 2020-04-20T23:45:52.431534+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR207CQH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR207CQH float

DNase-seq_ENCSR207CQH
DNase-seq ENCSR207CQH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR207CQH [0.295, 51.7]
n
9,364,068
mean
6.8
sd
7.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 93640680.29% 51882
chr1 954814 0.38% 5286
chr2 664872 0.27% 3712
chr3 523418 0.26% 2897
chr4 335919 0.18% 1838
chr5 426431 0.23% 2380
chr6 555657 0.33% 3039
chr7 421385 0.26% 2372
chr8 359567 0.25% 2014
chr9 391777 0.28% 2164
chr10 415756 0.31% 2326
chr11 472595 0.35% 2642
chr12 490460 0.37% 2678
chr13 191647 0.17% 1037
chr14 314600 0.29% 1753
chr15 309954 0.30% 1755
chr16 389431 0.43% 2138
chr17 543892 0.65% 2984
chr18 149829 0.19% 845
chr19 597420 1.02% 3209
chr20 262088 0.41% 1493
chr21 107689 0.23% 607
chr22 223818 0.44% 1257
chrX 252867 0.16% 1413
chrY 8182 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51882 1 660 180.49 180
global segment-length histogram

Files

Filename Size md5
ENCFF652SPK.bed.gz 565.96 KB 3844c735c13cc7582df22ca8c49030b2
ENCFF652SPK.tabix.bed.gz 512.86 KB d78c91b6e7df232da9f0ee4bedfea718
ENCFF652SPK.tabix.bed.gz.tbi 249.32 KB 21a568b7196033bce290441db04c8493
genomic_resource.yaml 2.78 KB 48ae597b0dc7891babf0b4244f767b42
statistics/