Resource

Id DNase-seq/ENCSR206KJNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR206KJN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR206KJN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:49.452882+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR206KJN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR206KJN float

DNase-seq_ENCSR206KJN
DNase-seq ENCSR206KJN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR206KJN [0.299, 133]
n
7,850,861
mean
11.8
sd
15.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78508610.24% 44299
chr1 790559 0.32% 4455
chr2 536095 0.22% 3053
chr3 417853 0.21% 2360
chr4 262698 0.14% 1485
chr5 344196 0.19% 1942
chr6 457438 0.27% 2554
chr7 360856 0.23% 2056
chr8 281039 0.19% 1595
chr9 310727 0.22% 1770
chr10 338717 0.25% 1938
chr11 406747 0.30% 2283
chr12 399008 0.30% 2242
chr13 158091 0.14% 899
chr14 282875 0.26% 1586
chr15 252514 0.25% 1455
chr16 322684 0.36% 1818
chr17 495939 0.60% 2759
chr18 119017 0.15% 690
chr19 562018 0.96% 3066
chr20 219793 0.34% 1261
chr21 90606 0.19% 517
chr22 195053 0.38% 1134
chrX 246338 0.16% 1381
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44299 6 740 177.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF408IRJ.bed.gz 499.35 KB d2a6c916f7069ee147e59195ac328aef
ENCFF408IRJ.tabix.bed.gz 453.29 KB fb126aa82e9d776ee53b1a3414e6c4e6
ENCFF408IRJ.tabix.bed.gz.tbi 217.66 KB 9547a89a8ac03934aacb4741208ace95
genomic_resource.yaml 1.88 KB def1f29a8cb7c2119b09757b6b5b7fc0
statistics/