Resource

Id DNase-seq/ENCSR198UKYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR198UKY [biosample_summary="Homo sapiens T-cell male adult (47 years)"]
Description
Labels
  • accession: ENCSR198UKY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (47 years)
  • date_created: 2020-04-12T19:00:09.744163+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR198UKY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR198UKY float

DNase-seq_ENCSR198UKY

DNase-seq ENCSR198UKY [biosample_summary="Homo sapiens T-cell male adult (47 years)"]
HISTOGRAM FOR DNase-seq_ENCSR198UKY [0.133, 67.4]
n
8,893,340
mean
5.86
sd
7.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88933400.28% 43900
chr1 904325 0.36% 4435
chr2 606168 0.25% 2989
chr3 471646 0.24% 2303
chr4 299392 0.16% 1452
chr5 395216 0.22% 1970
chr6 520142 0.30% 2544
chr7 405426 0.25% 2041
chr8 325831 0.22% 1617
chr9 351178 0.25% 1767
chr10 394689 0.29% 1951
chr11 452708 0.34% 2257
chr12 450114 0.34% 2225
chr13 182069 0.16% 888
chr14 311271 0.29% 1525
chr15 287098 0.28% 1444
chr16 365207 0.40% 1805
chr17 554290 0.67% 2728
chr18 143661 0.18% 720
chr19 606899 1.04% 2924
chr20 258052 0.40% 1311
chr21 108896 0.23% 540
chr22 222532 0.44% 1113
chrX 266642 0.17% 1302
chrY 9888 0.02% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43900 3 781 202.58 200
global segment-length histogram

Files

Filename Size md5
ENCFF339KLQ.bed.gz 490.87 KB c8519204b76f8f46794e4547a69bd93e
ENCFF339KLQ.tabix.bed.gz 448.81 KB 4156b54f8a165a17fd8ae82ee6d08ddc
ENCFF339KLQ.tabix.bed.gz.tbi 218.91 KB 248e990a227835815b98e5cca98e567b
genomic_resource.yaml 1.18 KB 0bc2190237602f908971f96c06ee199a
statistics/