Resource

Id DNase-seq/ENCSR197ZNWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR197ZNW [biosample_summary="Homo sapiens T-helper 2 cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR197ZNW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (24 years)
  • date_created: 2020-04-11T19:38:16.918205+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR197ZNW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR197ZNW float

DNase-seq_ENCSR197ZNW

DNase-seq ENCSR197ZNW [biosample_summary="Homo sapiens T-helper 2 cell male adult (24 years)"]
HISTOGRAM FOR DNase-seq_ENCSR197ZNW [0.191, 38.4]
n
5,684,364
mean
5.55
sd
5.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 56843640.18% 29332
chr1 588819 0.24% 3037
chr2 376115 0.16% 1938
chr3 278800 0.14% 1410
chr4 197918 0.10% 1008
chr5 245557 0.14% 1270
chr6 291707 0.17% 1484
chr7 270730 0.17% 1378
chr8 246446 0.17% 1310
chr9 224700 0.16% 1174
chr10 235831 0.18% 1222
chr11 335918 0.25% 1752
chr12 276585 0.21% 1408
chr13 107571 0.09% 547
chr14 214298 0.20% 1121
chr15 172493 0.17% 900
chr16 226661 0.25% 1188
chr17 347795 0.42% 1781
chr18 78924 0.10% 397
chr19 425015 0.73% 2160
chr20 161851 0.25% 867
chr21 75677 0.16% 403
chr22 144453 0.28% 766
chrX 155329 0.10% 785
chrY 5171 0.01% 26
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29332 2 860 193.79 180
global segment-length histogram

Files

Filename Size md5
ENCFF110VNG.bed.gz 328.19 KB adb51239579da8dab893eb2e01604e74
ENCFF110VNG.tabix.bed.gz 298.69 KB 94af8c46aa79debda1a282c480e833eb
ENCFF110VNG.tabix.bed.gz.tbi 147.53 KB de900647f7b59a80fb1ef7d99b996b5d
genomic_resource.yaml 1.21 KB e61be651130091cdc1e12d295537cbf0
statistics/