Resource

Id DNase-seq/ENCSR193LYAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR193LYA [biosample_summary="Homo sapiens muscle of back tissue female embryo (85 days)"]
Description
Labels
  • accession: ENCSR193LYA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue female embryo (85 days)
  • date_created: 2015-09-16T21:42:57.850016+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR193LYA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR193LYA float

DNase-seq_ENCSR193LYA

DNase-seq ENCSR193LYA [biosample_summary="Homo sapiens muscle of back tissue female embryo (85 days)"]
HISTOGRAM FOR DNase-seq_ENCSR193LYA [2, 1.93e+03]
n
17,348,488
mean
59.5
sd
62.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 173484880.54% 115340
chr1 1539594 0.62% 10233
chr2 1409761 0.58% 9377
chr3 1152758 0.58% 7663
chr4 955598 0.50% 6351
chr5 1004885 0.55% 6674
chr6 1059193 0.62% 7047
chr7 897509 0.56% 5956
chr8 842960 0.58% 5603
chr9 725609 0.52% 4828
chr10 869980 0.65% 5786
chr11 860176 0.64% 5723
chr12 819615 0.61% 5449
chr13 508215 0.44% 3378
chr14 565506 0.53% 3762
chr15 537829 0.53% 3582
chr16 525485 0.58% 3498
chr17 654227 0.79% 4352
chr18 425796 0.53% 2827
chr19 516730 0.88% 3440
chr20 443238 0.69% 2939
chr21 210818 0.45% 1399
chr22 281791 0.55% 1875
chrX 540015 0.35% 3590
chrY 1200 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 115340 16 450 150.41 150
global segment-length histogram

Files

Filename Size md5
ENCFF284MUO.bed.gz 1.09 MB 4015a72fcb9eb0e2348f7874d0f7b9e9
ENCFF284MUO.tabix.bed.gz 959.49 KB 5bdb10950d45fbf1acbc3a1587d1a216
ENCFF284MUO.tabix.bed.gz.tbi 507.18 KB 03bc65e65261b32fa250479c5ae2c725
genomic_resource.yaml 1.41 KB 57c4311be1ef5dae9b3b2786f9dfd21f
statistics/