Resource

Id DNase-seq/ENCSR186NTLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR186NTL [biosample_summary="Homo sapiens T-cell female adult (43 years)"]
Description
Labels
  • accession: ENCSR186NTL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (43 years)
  • date_created: 2020-04-12T19:00:08.830457+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR186NTL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (43 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR186NTL float

DNase-seq_ENCSR186NTL

DNase-seq ENCSR186NTL [biosample_summary="Homo sapiens T-cell female adult (43 years)"]
HISTOGRAM FOR DNase-seq_ENCSR186NTL [0.207, 86.4]
n
8,517,410
mean
8.12
sd
11.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85174100.26% 44335
chr1 859365 0.35% 4460
chr2 591974 0.24% 3083
chr3 460054 0.23% 2386
chr4 286269 0.15% 1481
chr5 377290 0.21% 1979
chr6 494073 0.29% 2553
chr7 394580 0.25% 2065
chr8 309611 0.21% 1640
chr9 348131 0.25% 1821
chr10 384163 0.29% 1974
chr11 434410 0.32% 2292
chr12 430585 0.32% 2254
chr13 171807 0.15% 878
chr14 300252 0.28% 1561
chr15 276718 0.27% 1453
chr16 358427 0.40% 1855
chr17 531275 0.64% 2757
chr18 134977 0.17% 708
chr19 572157 0.98% 2900
chr20 234396 0.36% 1254
chr21 102806 0.22% 551
chr22 213161 0.42% 1145
chrX 250929 0.16% 1285
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44335 5 720 192.11 180
global segment-length histogram

Files

Filename Size md5
ENCFF298AXR.bed.gz 496.5 KB b67f0a38693cc1f2a24d15025204b029
ENCFF298AXR.tabix.bed.gz 450.5 KB 835912a7d57d403e99c908cc8ea6f3fe
ENCFF298AXR.tabix.bed.gz.tbi 219.82 KB 307fbf34767736066e6d75ba6cb689f0
genomic_resource.yaml 1.19 KB e3554d37a7d12fd776dc82530a37e58f
statistics/