Resource

Id DNase-seq/ENCSR181OGWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR181OGW [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR181OGW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:21.526041+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR181OGW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR181OGW float

DNase-seq_ENCSR181OGW
DNase-seq ENCSR181OGW [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR181OGW [0.0611, 70.6]
n
15,739,721
mean
4.5
sd
7.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157397210.49% 80461
chr1 1549607 0.62% 7874
chr2 1210213 0.50% 6177
chr3 918015 0.46% 4724
chr4 623544 0.33% 3209
chr5 743379 0.41% 3813
chr6 974807 0.57% 4873
chr7 772616 0.48% 3952
chr8 624276 0.43% 3198
chr9 619079 0.45% 3195
chr10 731400 0.55% 3734
chr11 769351 0.57% 3966
chr12 811056 0.61% 4119
chr13 379117 0.33% 1913
chr14 556268 0.52% 2839
chr15 514519 0.50% 2670
chr16 561203 0.62% 2871
chr17 855399 1.03% 4349
chr18 277405 0.35% 1432
chr19 767378 1.31% 3891
chr20 419206 0.65% 2169
chr21 202340 0.43% 1037
chr22 325557 0.64% 1710
chrX 533922 0.34% 2745
chrY 64 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80461 1 1120 195.62 180
global segment-length histogram

Files

Filename Size md5
ENCFF684HWT.bed.gz 897.4 KB 90a6f25f184917a64302bf8c4fa6d32e
ENCFF684HWT.tabix.bed.gz 823.68 KB deb32da28a7121c0304b5c0b250ab924
ENCFF684HWT.tabix.bed.gz.tbi 329.11 KB 6b110cf3d06878b8d4fa1f87dc0f4c57
genomic_resource.yaml 1.33 KB 036542b8d020dbc500c7f81735f85990
statistics/