Resource

Id DNase-seq/ENCSR179CDHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR179CDH [biosample_summary="Homo sapiens trophoblast cell originated from H1"]
Description
Labels
  • accession: ENCSR179CDH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000351/
  • biosample_summary: Homo sapiens trophoblast cell originated from H1
  • date_created: 2015-09-16T21:42:21.015838+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR179CDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR179CDH float

DNase-seq_ENCSR179CDH
DNase-seq ENCSR179CDH [biosample_summary="Homo sapiens trophoblast cell originated from H1"]
 HISTOGRAM FOR DNase-seq_ENCSR179CDH [7, 1.92e+04]
n
31,211,853
mean
131
sd
195

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312118530.97% 207818
chr1 2808416 1.13% 18696
chr2 2610264 1.08% 17376
chr3 2075390 1.05% 13819
chr4 1780730 0.94% 11853
chr5 1843303 1.02% 12269
chr6 1914246 1.12% 12744
chr7 1587920 1.00% 10573
chr8 1503738 1.04% 10017
chr9 1311037 0.95% 8731
chr10 1489464 1.11% 9915
chr11 1571961 1.16% 10468
chr12 1529762 1.15% 10180
chr13 941735 0.82% 6273
chr14 954600 0.89% 6356
chr15 950444 0.93% 6325
chr16 912959 1.01% 6082
chr17 1128357 1.36% 7510
chr18 782262 0.97% 5213
chr19 809510 1.38% 5392
chr20 745330 1.16% 4967
chr21 350514 0.75% 2335
chr22 470130 0.93% 3131
chrX 1052631 0.67% 7012
chrY 87150 0.15% 581
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 207818 20 372 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF941ZRQ.bed.gz 1.98 MB ba5a1aaacdfcb7bd743130590bf2fc21
ENCFF941ZRQ.tabix.bed.gz 1.7 MB 39307832204663a87956449db4754499
ENCFF941ZRQ.tabix.bed.gz.tbi 711.64 KB eeb1c30fd3313fbf5dc213268a7bb163
genomic_resource.yaml 1.37 KB 9de1207149f36cc76db4dc8315b473fd
statistics/