Resource

Id DNase-seq/ENCSR174GXGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR174GXG [biosample_summary="Homo sapiens muscle of back tissue male embryo (101 days)"]
Description
Labels
  • accession: ENCSR174GXG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (101 days)
  • date_created: 2015-09-16T21:42:57.772955+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR174GXG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (101 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR174GXG float

DNase-seq_ENCSR174GXG
DNase-seq ENCSR174GXG [biosample_summary="Homo sapiens muscle of back tissue male embryo (101 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR174GXG [0.214, 17.7]
n
9,982,888
mean
2.91
sd
2.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 99828880.31% 53689
chr1 912590 0.37% 4888
chr2 775433 0.32% 4184
chr3 656259 0.33% 3522
chr4 503820 0.26% 2702
chr5 562264 0.31% 3029
chr6 614555 0.36% 3269
chr7 492871 0.31% 2686
chr8 459333 0.32% 2496
chr9 423092 0.31% 2286
chr10 466526 0.35% 2551
chr11 510950 0.38% 2745
chr12 509362 0.38% 2731
chr13 267848 0.23% 1467
chr14 335264 0.31% 1766
chr15 331815 0.33% 1778
chr16 324480 0.36% 1770
chr17 418060 0.50% 2260
chr18 220380 0.27% 1198
chr19 420053 0.72% 2087
chr20 254281 0.39% 1397
chr21 114114 0.24% 612
chr22 163072 0.32% 900
chrX 238602 0.15% 1326
chrY 7864 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53689 2 860 185.94 180
global segment-length histogram

Files

Filename Size md5
ENCFF897ZNB.bed.gz 565.48 KB 5003f6c96ae41b0e6ee50593a6eb054b
ENCFF897ZNB.tabix.bed.gz 505.78 KB e1bb018c9c582e81cf7537e73fa2bd50
ENCFF897ZNB.tabix.bed.gz.tbi 296.61 KB 49aa739f10b951bdc2a00a75a16416ad
genomic_resource.yaml 1.84 KB 5ca0a00b428448710c6973eea5e22227
statistics/