Resource
| Id | DNase-seq/ENCSR173YSO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR173YSO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (79 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (79 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF505OFL|/files/ENCFF505OFL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR173YSO | float |
DNase-seq_ENCSR173YSO |
DNase-seq ENCSR173YSO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (79 years)"]
|
 |
[0.0663, 11] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11632049 | 0.36% | 60840 |
| chr1 | 1070929 | 0.43% | 5615 |
| chr2 | 1042991 | 0.43% | 5388 |
| chr3 | 607634 | 0.31% | 3195 |
| chr4 | 412612 | 0.22% | 2100 |
| chr5 | 546107 | 0.30% | 2868 |
| chr6 | 548978 | 0.32% | 2877 |
| chr7 | 570094 | 0.36% | 2969 |
| chr8 | 524785 | 0.36% | 2679 |
| chr9 | 548066 | 0.40% | 2866 |
| chr10 | 620675 | 0.46% | 3252 |
| chr11 | 655534 | 0.49% | 3462 |
| chr12 | 484785 | 0.36% | 2503 |
| chr13 | 257679 | 0.23% | 1352 |
| chr14 | 377274 | 0.35% | 2016 |
| chr15 | 391138 | 0.38% | 2066 |
| chr16 | 448824 | 0.50% | 2382 |
| chr17 | 570839 | 0.69% | 3029 |
| chr18 | 220141 | 0.27% | 1182 |
| chr19 | 591632 | 1.01% | 3001 |
| chr20 | 377567 | 0.59% | 2017 |
| chr21 | 156649 | 0.34% | 852 |
| chr22 | 354817 | 0.70% | 1852 |
| chrX | 251232 | 0.16% | 1308 |
| chrY | 1067 | <0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60840 | 1 | 964 | 191.19 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF295XKP.bed.gz | 650.54 KB | 2a86c4aaaadfacc2a9cf5b74794d45eb |
| ENCFF295XKP.tabix.bed.gz | 596.02 KB | e912fc238f3d0855fd4418bb58314d4b |
| ENCFF295XKP.tabix.bed.gz.tbi | 237.66 KB | 9c5db344415afa15f79e9131510f1c73 |
| genomic_resource.yaml | 2.1 KB | d07b2fffcd9a95ea43475688a3d54474 |
| statistics/ |