Resource
| Id | DNase-seq/ENCSR173HPQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR173HPQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF940SGS|/files/ENCFF940SGS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28113004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR173HPQ | float |
DNase-seq_ENCSR173HPQ |
DNase-seq ENCSR173HPQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.285, 101] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7319114 | 0.23% | 40909 |
| chr1 | 746450 | 0.30% | 4144 |
| chr2 | 501475 | 0.21% | 2815 |
| chr3 | 389166 | 0.20% | 2189 |
| chr4 | 246533 | 0.13% | 1361 |
| chr5 | 324367 | 0.18% | 1844 |
| chr6 | 414195 | 0.24% | 2330 |
| chr7 | 338227 | 0.21% | 1904 |
| chr8 | 264000 | 0.18% | 1485 |
| chr9 | 295560 | 0.21% | 1662 |
| chr10 | 313399 | 0.23% | 1778 |
| chr11 | 377017 | 0.28% | 2116 |
| chr12 | 380764 | 0.29% | 2109 |
| chr13 | 149166 | 0.13% | 827 |
| chr14 | 263320 | 0.25% | 1469 |
| chr15 | 240874 | 0.24% | 1363 |
| chr16 | 304784 | 0.34% | 1688 |
| chr17 | 457652 | 0.55% | 2544 |
| chr18 | 107771 | 0.13% | 608 |
| chr19 | 509979 | 0.87% | 2769 |
| chr20 | 202188 | 0.31% | 1153 |
| chr21 | 85360 | 0.18% | 478 |
| chr22 | 184681 | 0.36% | 1034 |
| chrX | 222186 | 0.14% | 1239 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 40909 | 20 | 760 | 178.91 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF830OVF.bed.gz | 456.38 KB | b06e79330c3497ee3212c84265114881 |
| ENCFF830OVF.tabix.bed.gz | 411.55 KB | 3c3f058e0b25f89840b92602692f7506 |
| ENCFF830OVF.tabix.bed.gz.tbi | 209.82 KB | d9b6ca48860e4f0173c9f24bfadf4668 |
| genomic_resource.yaml | 2.21 KB | 2d234cba621126bb764248006b5cc4d9 |
| statistics/ |