Resource

Id DNase-seq/ENCSR171APMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR171APM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
Description
Labels
  • accession: ENCSR171APM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • date_created: 2020-04-19T18:36:50.313817+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR171APM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR171APM float

DNase-seq_ENCSR171APM
DNase-seq ENCSR171APM [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR171APM [0.501, 45.5]
n
6,626,971
mean
6.51
sd
5.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 66269710.21% 32933
chr1 688405 0.28% 3415
chr2 470573 0.19% 2357
chr3 368343 0.19% 1840
chr4 228470 0.12% 1096
chr5 291151 0.16% 1451
chr6 385279 0.23% 1895
chr7 300817 0.19% 1483
chr8 245132 0.17% 1241
chr9 271237 0.20% 1347
chr10 282502 0.21% 1415
chr11 337667 0.25% 1674
chr12 341488 0.26% 1692
chr13 128998 0.11% 622
chr14 227892 0.21% 1135
chr15 221091 0.22% 1139
chr16 287406 0.32% 1436
chr17 396987 0.48% 1975
chr18 99769 0.12% 500
chr19 463281 0.79% 2237
chr20 181591 0.28% 940
chr21 72224 0.15% 357
chr22 163085 0.32% 825
chrX 173583 0.11% 861
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32933 1 780 201.23 200
global segment-length histogram

Files

Filename Size md5
ENCFF960KOG.bed.gz 356.14 KB a653d16cfccc947136297abf87ef7957
ENCFF960KOG.tabix.bed.gz 320.86 KB 7d356eb2adc658a91301a41cfc2a8f6c
ENCFF960KOG.tabix.bed.gz.tbi 182.0 KB 79b726443b831945ae2e8c65689b5cf3
genomic_resource.yaml 2.25 KB e45757f3b9fa11a65f58d17d003a2150
statistics/