Resource

Id DNase-seq/ENCSR166KPVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR166KPV [biosample_summary="Homo sapiens endodermal cell"]
Description
Labels
  • accession: ENCSR166KPV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000223/
  • biosample_summary: Homo sapiens endodermal cell
  • date_created: 2017-08-31T05:31:18.663856+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR166KPV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR166KPV float

DNase-seq_ENCSR166KPV
DNase-seq ENCSR166KPV [biosample_summary="Homo sapiens endodermal cell"]
 HISTOGRAM FOR DNase-seq_ENCSR166KPV [1, 9.21e+04]
n
79,247,782
mean
217
sd
438

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 792477822.46% 527232
chr1 6869954 2.76% 45684
chr2 6588246 2.72% 43817
chr3 4541154 2.29% 30209
chr4 3483888 1.83% 23174
chr5 4284171 2.36% 28503
chr6 4196767 2.46% 27916
chr7 3949271 2.48% 26281
chr8 3601353 2.48% 23965
chr9 3254615 2.35% 21662
chr10 4052894 3.03% 26945
chr11 4033615 2.99% 26855
chr12 4881741 3.66% 32484
chr13 2101304 1.84% 13974
chr14 2408721 2.25% 16032
chr15 2552951 2.50% 16986
chr16 2478228 2.74% 16497
chr17 4602172 5.53% 30634
chr18 1850859 2.30% 12316
chr19 2318062 3.95% 15429
chr20 2163275 3.36% 14392
chr21 980780 2.10% 6524
chr22 1693637 3.33% 11260
chrX 2327424 1.49% 15476
chrY 32700 0.06% 217
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 527232 1 451 150.31 150
global segment-length histogram

Files

Filename Size md5
ENCFF857BTS.bed.gz 4.92 MB d8d8a3063f48f983852d4e7258a8431f
ENCFF857BTS.tabix.bed.gz 4.22 MB 7301fde7c6531ddc2d9020f192e695b2
ENCFF857BTS.tabix.bed.gz.tbi 845.75 KB 8e51f101f8a365b76f797ea3b9dd9781
genomic_resource.yaml 1.33 KB 1d57335fbab38edc2e0b179ecbe28d21
statistics/