Resource

Id DNase-seq/ENCSR163BSCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR163BSC [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR163BSC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-10T18:27:51.333062+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR163BSC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR163BSC float

DNase-seq_ENCSR163BSC
DNase-seq ENCSR163BSC [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR163BSC [0.0346, 32.6]
n
26,582,918
mean
1.87
sd
2.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 265829180.83% 144417
chr1 2447848 0.98% 13211
chr2 2138902 0.88% 11717
chr3 1504867 0.76% 8258
chr4 1065914 0.56% 5825
chr5 1317077 0.73% 7221
chr6 1339991 0.78% 7315
chr7 1317704 0.83% 7238
chr8 1184979 0.82% 6490
chr9 1130925 0.82% 6191
chr10 1370857 1.02% 7440
chr11 1516144 1.12% 8175
chr12 1208065 0.91% 6550
chr13 596705 0.52% 3301
chr14 911448 0.85% 4934
chr15 902455 0.88% 4963
chr16 1034022 1.14% 5596
chr17 1287371 1.55% 6873
chr18 575436 0.72% 3165
chr19 1105624 1.89% 5716
chr20 855727 1.33% 4667
chr21 361702 0.77% 1970
chr22 777228 1.53% 4107
chrX 631041 0.40% 3486
chrY 886 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 144417 1 971 184.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF271KOH.bed.gz 1.55 MB fb4a5403c4ab23b559b9d55a290d0084
ENCFF271KOH.tabix.bed.gz 1.41 MB 5d1c8d50e6d1fb71087d09a8006017bb
ENCFF271KOH.tabix.bed.gz.tbi 469.88 KB 5e956ba10b76b2c4324d046b8abdc8cb
genomic_resource.yaml 1.47 KB 4da8061df25b2370967b83d397633a50
statistics/