Resource

Id DNase-seq/ENCSR156CLCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR156CLC [biosample_summary="Homo sapiens brain tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR156CLC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:27.697398+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR156CLC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR156CLC float

DNase-seq_ENCSR156CLC
DNase-seq ENCSR156CLC [biosample_summary="Homo sapiens brain tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR156CLC [0.134, 43.8]
n
20,327,470
mean
2.64
sd
3.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 203274700.63% 111519
chr1 1734183 0.70% 9518
chr2 1702953 0.70% 9356
chr3 1381430 0.70% 7640
chr4 1125396 0.59% 6212
chr5 1239966 0.68% 6792
chr6 1215440 0.71% 6674
chr7 1098887 0.69% 5995
chr8 1028783 0.71% 5636
chr9 838714 0.61% 4578
chr10 957998 0.72% 5268
chr11 1027372 0.76% 5613
chr12 1006458 0.76% 5516
chr13 622444 0.54% 3437
chr14 676740 0.63% 3658
chr15 616275 0.60% 3377
chr16 605223 0.67% 3357
chr17 704151 0.85% 3878
chr18 528051 0.66% 2898
chr19 535164 0.91% 2828
chr20 504763 0.78% 2764
chr21 231188 0.49% 1254
chr22 304991 0.60% 1679
chrX 640760 0.41% 3590
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111519 5 940 182.28 180
global segment-length histogram

Files

Filename Size md5
ENCFF317LIS.bed.gz 1.16 MB b19f15eb2cfcbbbffc3056c14b5ff06e
ENCFF317LIS.tabix.bed.gz 1.04 MB 4fdabd14bc93bc41e19459fca77c2a1c
ENCFF317LIS.tabix.bed.gz.tbi 521.62 KB 530dda1c6c30d4cba912acc2a33ef404
genomic_resource.yaml 1.82 KB 4367542e1d2ae5285614f2ee6b3768b2
statistics/