Resource

Id DNase-seq/ENCSR155NPLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR155NPL [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (113 days)"]
Description
Labels
  • accession: ENCSR155NPL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue male embryo (113 days)
  • date_created: 2015-09-16T21:42:34.147659+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR155NPL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR155NPL float

DNase-seq_ENCSR155NPL
DNase-seq ENCSR155NPL [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (113 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR155NPL [0.172, 37]
n
12,028,996
mean
3.55
sd
3.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 120289960.37% 69756
chr1 1092300 0.44% 6280
chr2 954747 0.39% 5543
chr3 789068 0.40% 4563
chr4 618306 0.33% 3655
chr5 666299 0.37% 3876
chr6 719575 0.42% 4201
chr7 601746 0.38% 3516
chr8 545265 0.38% 3236
chr9 503409 0.36% 2926
chr10 587829 0.44% 3461
chr11 613702 0.45% 3528
chr12 604954 0.45% 3489
chr13 315438 0.28% 1874
chr14 388164 0.36% 2244
chr15 390336 0.38% 2287
chr16 399343 0.44% 2296
chr17 489130 0.59% 2792
chr18 284756 0.35% 1679
chr19 492878 0.84% 2626
chr20 313481 0.49% 1843
chr21 132629 0.28% 769
chr22 209899 0.41% 1212
chrX 306968 0.20% 1808
chrY 8774 0.02% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69756 2 740 172.44 165
global segment-length histogram

Files

Filename Size md5
ENCFF849YSM.bed.gz 748.32 KB ada922656b95b07e7a7603789796be45
ENCFF849YSM.tabix.bed.gz 662.23 KB b012fcacfb255e460eed23280de78c0a
ENCFF849YSM.tabix.bed.gz.tbi 378.22 KB 5c82212a9527d160d2fc5b84d6497775
genomic_resource.yaml 1.88 KB c5b14a1a226a75c9fba71c3e2ca42f7f
statistics/