Resource

Id DNase-seq/ENCSR155NBScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR155NBS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR155NBS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:50.116339+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR155NBS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR155NBS float

DNase-seq_ENCSR155NBS
DNase-seq ENCSR155NBS [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR155NBS [0.24, 78.2]
n
8,710,430
mean
7.45
sd
9.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87104300.27% 47293
chr1 887341 0.36% 4805
chr2 597047 0.25% 3267
chr3 470140 0.24% 2538
chr4 284313 0.15% 1521
chr5 375361 0.21% 2042
chr6 502250 0.29% 2681
chr7 394536 0.25% 2153
chr8 321359 0.22% 1748
chr9 359885 0.26% 1950
chr10 386441 0.29% 2109
chr11 447119 0.33% 2458
chr12 454204 0.34% 2442
chr13 172987 0.15% 939
chr14 304380 0.28% 1650
chr15 286108 0.28% 1575
chr16 362933 0.40% 1970
chr17 544736 0.65% 2962
chr18 133053 0.17% 734
chr19 587047 1.00% 3124
chr20 246357 0.38% 1381
chr21 110340 0.24% 595
chr22 219921 0.43% 1210
chrX 262482 0.17% 1438
chrY 90 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47293 10 760 184.18 180
global segment-length histogram

Files

Filename Size md5
ENCFF330FSC.bed.gz 530.15 KB 7c0358598b480a63a5c6c59c4ad71f60
ENCFF330FSC.tabix.bed.gz 482.44 KB 091a57dab2570db22495f13a614b96ed
ENCFF330FSC.tabix.bed.gz.tbi 224.49 KB 3096bb6a553b75e2f588390c4300762e
genomic_resource.yaml 1.27 KB 78ea69a75935806a5c875170c38745c4
statistics/